Backup stuck in loop Completing previous backup

For the past 2 days, I have not had a successful backup. When I logged into the browser UI on a lan-connected machine, I saw red error dialogs about /tmp filesystem being full.

I came to the host machine and logged into the UI and saw the following, which keeps repeating in a loop:
starting backup
verifying backend data
completing (previous backup)
counting files nnn/xxxxx
The connection to the server is lost. Attempting connection in xxx seconds
Connecting to server.
Hangs at this point.
Refreshing browser page shows “Not logged in”
Log in with password, and this restarts the whole cycle. Rebooting the computer has no effect.

No log is produced.

I am running
Duplicati - 2.0.6.3_beta_2021-06-17
Linux xxxxxxx 5.18.17-100.fc35.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Aug 11 14:34:40 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

Kindly suggest solution

Do you use a separate device for /tmp? that’s the usual reason for this kind of problem, there is still plenty of free space but not where it’s needed for Duplicati.

No, I let Fedora assign tmpfs. By default, it assigns half of RAM size, so my tmpfs is 8 GB. I have increased it to 64 GB, but still get stuck in the same loop.

sudo mount -o remount,size=64G,noatime /tmp

Note that I rarely get the /tmp/ full errors. Mostly just the loop that I mention. During this, /tmp remains available.

df -h /tmp
Filesystem Size Used Avail Use% Mounted on
tmpfs 64G 34M 64G 1% /tmp

I found the following in journalctl:

Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: mono-sgen: pthread_mutex_lock.c:90: ___pthread_mutex_lock: Assertion `mutex->__data.__owner == 0' failed.
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         Native Crash Reporting
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: Got a SIGABRT while executing native code. This usually indicates
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: a fatal error in the mono runtime or one of the native libraries
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: used by your application.
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         Native stacktrace:
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x55a61a07b83a - /usr/bin/mono-sgen :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x55a61a044c5e - /usr/bin/mono-sgen :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x55a61a0787dc - /usr/bin/mono-sgen :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f1974055350 - /lib64/libc.so.6 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19740a1afc - /lib64/libc.so.6 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19740552a6 - /lib64/libc.so.6 : raise
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19740287f3 - /lib64/libc.so.6 : abort
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f197402871b - /lib64/libc.so.6 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f197404e1f6 - /lib64/libc.so.6 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19740a32a0 - /lib64/libc.so.6 : pthread_mutex_lock
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19743d86da - /lib64/libnss_sss.so.2 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19743d91ee - /lib64/libnss_sss.so.2 :
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f19743db126 - /lib64/libnss_sss.so.2 : _nss_sss_getpwuid_r
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f197411795f - /lib64/libc.so.6 : getpwuid_r
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x7f196436b447 - /lib64/libMonoPosixHelper.so : Mono_Posix_Syscall_getpwuid_r
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         0x414261d9 - Unknown
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]:         Telemetry Dumper:
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: =================================================================
Aug 16 01:21:44 XXXXX3 duplicati-server[1588]: Pkilling 0x139746404689472x from 0x139746402588224x

et al

Make sure your Options screen Remote volume size is not something huge. The default is just 50 MB.

I see you posted to below, but didn’t give any guessing as to what changed 2 days ago. Can you help?

Suddenly started crashing - mono-sgen pthread_mutex_lock.c

I’m not sure what issue we’re chasing now. Maybe both? Maybe keep /tmp here and mono crash there?

Thanks for your assistance.

Remote Volume Size is 10 MB. As far as I recall, this was the default when I configured this backup.

I posted to other thread since it seemed it might be related.

I’m not convinced that /tmp is the real issue, since it only happens occasionally.

Since the last successful backup, I performed a routine dnf --refresh upgrade. Here is the history of what was changed and warnings issued.

[xxxxx3@XXXXX3 ~]$ dnf history  info 631
Transaction ID : 631
Begin time     : Sat 13 Aug 2022 03:32:20 PM EDT
Begin rpmdb    : fxxx5
End time       : Sat 13 Aug 2022 03:36:01 PM EDT (221 seconds)
End rpmdb      : bxxxd
User           : JimR <xxxxx3>
Return-Code    : Success
Releasever     : 35
Command Line   : --refresh upgrade
Comment        : 
Packages Altered:
    Install       kernel-5.18.16-100.fc35.x86_64                                  @updates
    Install       kernel-core-5.18.16-100.fc35.x86_64                             @updates
    Install       kernel-devel-5.18.16-100.fc35.x86_64                            @updates
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    Upgrade       xorg-x11-drv-nvidia-3:515.65.01-1.fc35.x86_64                   @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-3:515.57-1.fc35.x86_64                      @@System
    Upgrade       xorg-x11-drv-nvidia-cuda-libs-3:515.65.01-1.fc35.x86_64         @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-cuda-libs-3:515.57-1.fc35.x86_64            @@System
    Upgrade       xorg-x11-drv-nvidia-kmodsrc-3:515.65.01-1.fc35.x86_64           @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-kmodsrc-3:515.57-1.fc35.x86_64              @@System
    Upgrade       xorg-x11-drv-nvidia-libs-3:515.65.01-1.fc35.i686                @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-libs-3:515.57-1.fc35.i686                   @@System
    Upgrade       xorg-x11-drv-nvidia-libs-3:515.65.01-1.fc35.x86_64              @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-libs-3:515.57-1.fc35.x86_64                 @@System
    Upgrade       xorg-x11-drv-nvidia-power-3:515.65.01-1.fc35.x86_64             @rpmfusion-nonfree-updates
    Upgraded      xorg-x11-drv-nvidia-power-3:515.57-1.fc35.x86_64                @@System
    Reason Change AtomicParsley-0.9.5-18.fc35.x86_64                              @fedora
    Removed       kernel-5.18.4-101.fc35.x86_64                                   @@System
    Removed       kernel-core-5.18.4-101.fc35.x86_64                              @@System
    Removed       kernel-devel-5.18.4-101.fc35.x86_64                             @@System
    Removed       kernel-modules-5.18.4-101.fc35.x86_64                           @@System
    Removed       kernel-modules-extra-5.18.4-101.fc35.x86_64                     @@System
    Removed       kmod-nvidia-5.18.4-101.fc35.x86_64-3:515.57-1.fc35.x86_64       @@System
Scriptlet output:
   1 warning: /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/java.security created as /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/java.security.rpmnew
   2 warning: /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/nss.fips.cfg created as /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/nss.fips.cfg.rpmnew
   3 restored /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/java.security.rpmnew to /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/java.security
   4 restored /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/nss.fips.cfg.rpmnew to /etc/java/java-1.8.0-openjdk/java-1.8.0-openjdk-1.8.0.342.b07-1.fc35.x86_64/lib/security/nss.fips.cfg
   5 warning: /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/java.security created as /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/java.security.rpmnew
   6 warning: /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/nss.fips.cfg created as /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/nss.fips.cfg.rpmnew
   7 warning: /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/lib/security/public_suffix_list.dat created as /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/lib/security/public_suffix_list.dat.rpmnew
   8 restored /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/java.security.rpmnew to /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/java.security
   9 restored /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/nss.fips.cfg.rpmnew to /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/conf/security/nss.fips.cfg
  10 restored /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/lib/security/public_suffix_list.dat.rpmnew to /etc/java/java-11-openjdk/java-11-openjdk-11.0.16.0.8-1.fc35.x86_64/lib/security/public_suffix_list.dat
  11 warning: /etc/shadow created as /etc/shadow.rpmnew

argh, this function again. And there is this thread about a sudden crash for a Fedora system with the same function involved:

Maybe the same upgrade in both cases ? It’s Fedora 35 in both cases it seems.