Release History for SQLite supports the thinking:
2017-03-30 (3.18.0)
- Added the PRAGMA optimize command
Current Beta (and many prior) ship only a Windows SQLite. On Linux, it uses the system copy.
This is (I think) changing with current Canary, although I don’t know for sure if change will stay:
Feel free to test Canary if you like, but note that they’re first exposures of new fixes and bugs.
EDIT:
Solidify SQLite dependencies #4024 discusses the drawback of running on a system’s SQLite. Current emerging direction of Duplicati is fewer dependencies. Doesn’t even need mono either.